References

1

Burge, C.; Karlin, S. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Bio., 268:78--94.

2

Cover, T.M.; Thomas, J.A. 1991. Elements of Informaion Theory. Wiley, New York.

3

M. S. Gelfand. 1995. Prediction of Function in DNA Sequence Analysis. J. Comp. Bio., 2:87--115.

4

Green, P. Genome Sequence Analysis. Course notes (unpublished).

5

Henderson, J.; Salzberg, S.; Fasman, K.H. 1997. Finding Genes in DNA with a Hidden Markov Model J. Comp. Bio., 4:127--141.

6

Krogh, A.; Mian, I. S.; Houssler, C. 1994. A Hidden Markov Model That Finds Genes in E. Coli DNA. Nucleic Acids Research 22:4768--4778.

7

Kulp, D.; Houssler, D.; Reese, M.G.; Eeckman, F.H. 1996. A generalized Hidden Markov Model for the recognition of genes in human DNA In Proc. 4th Int. Conf. on Intelligent Systems for Molecular Biology, AAAI/MIT Press

8

Stephens, R.M.; Schneider, T.D. 1992. Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites. J. Mol. Bio. 228:1124-36.

9

Xu, Y.; Einstein, J. R.; Shah, M.; Uberbacher, E.C. 1994. An improved system for exon recognition and gene modeling in human DNA sequences. In Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, AAAI/MIT Press