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Variations, extensions and generalizations.

There are many variations on the preceding arguments. One can consider the same ideas with ordered or unordered tetrads, or with half-tetrads; one can discuss more than two loci, including loci on different arms of the same chromosome and on different chromosomes; one can replace the Poisson model by a more general point process model, such as a renewal process, and chi-square renewal processes have proved useful in this context; one can generalize NCI to permit the non-sister chromatid pair chosen for any exchange to depend on the chromatids chosen in adjacent exchanges; and one can include sister chromatid exchange. We will explore some of these ideas in exercises, and mention others next week.

Exercise 6. Suppose that diploid cells from a fungus having ordered tetrads is undergoing meiosis, and that we are interested in the proportion of second division segregants (SDS). Let N be the number of exchanges on the four strand bundle between the locus and its centromere. Under NCI, prove that the probability that a tetrad has second division segregation, given N=n, is Deduce that under the Poisson model introduced earlier, the unconditional probability of SDS is

where 2d is the expected number of exchanges between the locus and its centromere. (Hint: As with an earlier exercise, seek the number of the strand configurations which lead to SDS, obtaining the recursion where is the number leading to first division segregation (FDS). An inductive proof of these relations will use a knowledge of whether the nth and th exchanges are on 2, 3 or 4 strands.

Exercise 7. Formulate and prove an analogue of Mather's formula for 3 loci along a chromosome arm. Generalize to L loci.



Simon Cawley
Mon Apr 20 19:50:16 PDT 1998